PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0037s0013.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 346aa    MW: 38394.1 Da    PI: 7.238
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0037s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.68.8e-2892173271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Kaladp0037s0013.1.p  92 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpaiglgpdqqqyDEKNIRRRVYDALNVLMAMDIISK-HKKEIQWKG 173
                          789********...*****999******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.0E-1245345IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.6E-4587178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.2E-3491173IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.7E-2593173IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.67E-2194174IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.64E-40178281IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.14E-42179286No hitNo description
SMARTSM011382.2E-62180343IPR014889Transcription factor DP, C-terminal
PfamPF087811.3E-40181293IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVAGHENGDR NPATGSRGGG VTRSWGTTVS GGQSVSTSGS VGSPTRSEQA ATTPVSESTF  60
VRLNHLDIHA DDAEARGKKK KRGQRAVGGD KNGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFADPA IGLGPDQQQY DEKNIRRRVY DALNVLMAMD IISKHKKEIQ WKGLPRTTLN  180
DVEELKVERM ALRNKIEKKA AYLQELEEQY VGLQNLMQRN EQLFSSENTP SQGVQLPFIL  240
VQTRPHATVE VEISEDMQLV LFDFNSTPFE LHDDNYVLKA MNFCQRSQID AENNFPVDVG  300
EGCCITNIYQ PKIPQQQPHR SSNPGRPPTS PPLPGIIKAR VKPEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3585178193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241818.10.0PREDICTED: transcription factor-like protein DPB
RefseqXP_010241817.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-146DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0B0MQF01e-179A0A0B0MQF0_G
STRINGGLYMA11G01270.11e-162(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-121Transcription factor DP